IL_7SYJ_027

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAGUCCA*UUAACGAGGAUC

Length

19 nucleotides

Bulged bases

7SYJ|1|2|G|588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|G|563
7SYJ|1|2|A|564
7SYJ|1|2|G|565
7SYJ|1|2|U|566
7SYJ|1|2|C|567
7SYJ|1|2|C|568
7SYJ|1|2|A|569
*
7SYJ|1|2|U|581
7SYJ|1|2|U|582
7SYJ|1|2|A|583
7SYJ|1|2|A|584
7SYJ|1|2|C|585
7SYJ|1|2|G|586
7SYJ|1|2|A|587
7SYJ|1|2|G|588
7SYJ|1|2|G|589
7SYJ|1|2|A|590
7SYJ|1|2|U|591
7SYJ|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

40S ribosomal protein S24

Chain f

eS30