IL_7SYJ_028

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAGGGCAAGUC*GCUC

Length

15 nucleotides

Bulged bases

7SYJ|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|G|598
7SYJ|1|2|A|599
7SYJ|1|2|G|600
7SYJ|1|2|G|601
7SYJ|1|2|G|602
7SYJ|1|2|C|603
7SYJ|1|2|A|604
7SYJ|1|2|A|605
7SYJ|1|2|G|606
7SYJ|1|2|U|607
7SYJ|1|2|C|608
*
7SYJ|1|2|G|635
7SYJ|1|2|C|636
7SYJ|1|2|U|637
7SYJ|1|2|C|638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain E

uS3

Chain K

uS4

Chain Y

uS12

Chain f

eS30