IL_7SYJ_049

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAGGUUC*GUUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|G|1041
7SYJ|1|2|A|1042
7SYJ|1|2|G|1043
7SYJ|1|2|G|1044
7SYJ|1|2|U|1045
7SYJ|1|2|U|1046
7SYJ|1|2|C|1047
*
7SYJ|1|2|G|1071
7SYJ|1|2|U|1072
7SYJ|1|2|U|1073
7SYJ|1|2|C|1074

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain P

uS11

Chain b

eS26 (S26)