IL_7SYJ_060

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7SYJ|1|2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYJ_060 not in the Motif Atlas

Geometric match to IL_4V9F_107

Geometric discrepancy: 0.2481

The information below is about IL_4V9F_107

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7SYJ|1|2|G|1325
7SYJ|1|2|U|1326
7SYJ|1|2|G|1327
*
7SYJ|1|2|C|1502
7SYJ|1|2|C|1503

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain e

eS29