IL_7SYJ_061
3D structure
- PDB id
- 7SYJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- UGCAUGGC*GUCUGUGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7SYJ|1|2|C|1331, 7SYJ|1|2|U|1494, 7SYJ|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYJ_061 not in the Motif Atlas
- Homologous match to IL_8C3A_505
- Geometric discrepancy: 0.2885
- The information below is about IL_8C3A_505
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06463.1
- Basepair signature
- cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7SYJ|1|2|U|1329
7SYJ|1|2|G|1330
7SYJ|1|2|C|1331
7SYJ|1|2|A|1332
7SYJ|1|2|U|1333
7SYJ|1|2|G|1334
7SYJ|1|2|G|1335
7SYJ|1|2|C|1336
*
7SYJ|1|2|G|1491
7SYJ|1|2|U|1492
7SYJ|1|2|C|1493
7SYJ|1|2|U|1494
7SYJ|1|2|G|1495
7SYJ|1|2|U|1496
7SYJ|1|2|G|1497
7SYJ|1|2|A|1498
7SYJ|1|2|U|1499
7SYJ|1|2|G|1500
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain L
- eS10
- Chain V
- uS10
- Chain e
- eS29
Coloring options: