IL_7SYJ_068

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

7SYJ|1|2|G|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYJ_068 not in the Motif Atlas

Geometric match to IL_2IZN_001

Geometric discrepancy: 0.2991

The information below is about IL_2IZN_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

7SYJ|1|2|C|1412
7SYJ|1|2|G|1413
*
7SYJ|1|2|C|1427
7SYJ|1|2|G|1428
7SYJ|1|2|G|1429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain U

eS19