IL_7SYJ_074

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGCUA*UAAAAG

Length

11 nucleotides

Bulged bases

7SYJ|1|2|A|1824, 7SYJ|1|2|A|1825

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|C|1708
7SYJ|1|2|G|1709
7SYJ|1|2|C|1710
7SYJ|1|2|U|1711
7SYJ|1|2|A|1712
*
7SYJ|1|2|U|1821
7SYJ|1|2|A|1822
7SYJ|1|2|A|1823
7SYJ|1|2|A|1824
7SYJ|1|2|A|1825
7SYJ|1|2|G|1826

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41