IL_7SYJ_089

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUUAUGGU*AACGUC

Length

14 nucleotides

Bulged bases

7SYJ|1|2|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|G|108
7SYJ|1|2|U|109
7SYJ|1|2|U|110
7SYJ|1|2|A|111
7SYJ|1|2|U|112
7SYJ|1|2|G|113
7SYJ|1|2|G|114
7SYJ|1|2|U|115
*
7SYJ|1|2|A|348
7SYJ|1|2|A|349
7SYJ|1|2|C|350
7SYJ|1|2|G|351
7SYJ|1|2|U|352
7SYJ|1|2|C|353

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain J

eS8

Chain M

uS17