IL_7SYJ_091

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGAC*GGCCC

Length

9 nucleotides

Bulged bases

7SYJ|1|2|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|G|534
7SYJ|1|2|G|535
7SYJ|1|2|A|536
7SYJ|1|2|C|537
*
7SYJ|1|2|G|546
7SYJ|1|2|G|547
7SYJ|1|2|C|548
7SYJ|1|2|C|549
7SYJ|1|2|C|550

Current chains

Chain 2

18S rRNA

Nearby chains

Chain f

eS30