IL_7SYJ_093

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

7SYJ|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYJ_093 not in the Motif Atlas

Geometric match to IL_2PJP_001

Geometric discrepancy: 0.3806

The information below is about IL_2PJP_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7SYJ|1|2|G|925
7SYJ|1|2|A|926
*
7SYJ|1|2|U|1015
7SYJ|1|2|U|1016
7SYJ|1|2|U|1017

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain X

uS8

Chain c

eS27