IL_7SYJ_094

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGGCCGGGG*CAAGAAUG

Length

17 nucleotides

Bulged bases

7SYJ|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|C|927
7SYJ|1|2|G|928
7SYJ|1|2|G|929
7SYJ|1|2|C|930
7SYJ|1|2|C|931
7SYJ|1|2|G|932
7SYJ|1|2|G|933
7SYJ|1|2|G|934
7SYJ|1|2|G|935
*
7SYJ|1|2|C|1007
7SYJ|1|2|A|1008
7SYJ|1|2|A|1009
7SYJ|1|2|G|1010
7SYJ|1|2|A|1011
7SYJ|1|2|A|1012
7SYJ|1|2|U|1013
7SYJ|1|2|G|1014

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain b

eS26 (S26)

Chain c

eS27