IL_7SYJ_097

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GACAGGAUUGACAG*CUUUCUCGAUUC

Length

26 nucleotides

Bulged bases

7SYJ|1|2|G|1285, 7SYJ|1|2|U|1307, 7SYJ|1|2|U|1310

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|G|1281
7SYJ|1|2|A|1282
7SYJ|1|2|C|1283
7SYJ|1|2|A|1284
7SYJ|1|2|G|1285
7SYJ|1|2|G|1286
7SYJ|1|2|A|1287
7SYJ|1|2|U|1288
7SYJ|1|2|U|1289
7SYJ|1|2|G|1290
7SYJ|1|2|A|1291
7SYJ|1|2|C|1292
7SYJ|1|2|A|1293
7SYJ|1|2|G|1294
*
7SYJ|1|2|C|1305
7SYJ|1|2|U|1306
7SYJ|1|2|U|1307
7SYJ|1|2|U|1308
7SYJ|1|2|C|1309
7SYJ|1|2|U|1310
7SYJ|1|2|C|1311
7SYJ|1|2|G|1312
7SYJ|1|2|A|1313
7SYJ|1|2|U|1314
7SYJ|1|2|U|1315
7SYJ|1|2|C|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a