IL_7SYJ_100

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

7SYJ|1|2|U|1585, 7SYJ|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|G|1541
7SYJ|1|2|C|1542
7SYJ|1|2|U|1543
7SYJ|1|2|C|1544
7SYJ|1|2|A|1545
7SYJ|1|2|G|1546
7SYJ|1|2|C|1547
7SYJ|1|2|G|1548
7SYJ|1|2|U|1549
7SYJ|1|2|G|1550
*
7SYJ|1|2|C|1582
7SYJ|1|2|C|1583
7SYJ|1|2|G|1584
7SYJ|1|2|U|1585
7SYJ|1|2|U|1586
7SYJ|1|2|G|1587
7SYJ|1|2|A|1588
7SYJ|1|2|A|1589
7SYJ|1|2|C|1590
7SYJ|1|2|C|1591
7SYJ|1|2|C|1592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain a

eS25 (S25)

Chain e

eS29