IL_7SYJ_101

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUACCGAU*AGAGGAAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|C|1713
7SYJ|1|2|U|1714
7SYJ|1|2|A|1715
7SYJ|1|2|C|1716
7SYJ|1|2|C|1717
7SYJ|1|2|G|1718
7SYJ|1|2|A|1719
7SYJ|1|2|U|1720
*
7SYJ|1|2|A|1813
7SYJ|1|2|G|1814
7SYJ|1|2|A|1815
7SYJ|1|2|G|1816
7SYJ|1|2|G|1817
7SYJ|1|2|A|1818
7SYJ|1|2|A|1819
7SYJ|1|2|G|1820

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41