IL_7SYK_012

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYK|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYK_012 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1687

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7SYK|1|2|G|145
7SYK|1|2|G|146
7SYK|1|2|A|147
7SYK|1|2|U|148
7SYK|1|2|A|149
7SYK|1|2|A|150
7SYK|1|2|C|151
*
7SYK|1|2|G|167
7SYK|1|2|C|168
7SYK|1|2|U|169
7SYK|1|2|A|170
7SYK|1|2|A|171
7SYK|1|2|U|172
7SYK|1|2|A|173
7SYK|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

40S ribosomal protein S24