IL_7SYK_030
3D structure
- PDB id
- 7SYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 7SYK|1|2|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYK_030 not in the Motif Atlas
- Geometric match to IL_7A0S_092
- Geometric discrepancy: 0.2876
- The information below is about IL_7A0S_092
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
7SYK|1|2|A|599
7SYK|1|2|G|600
7SYK|1|2|G|601
7SYK|1|2|G|602
7SYK|1|2|C|603
7SYK|1|2|A|604
7SYK|1|2|A|605
7SYK|1|2|G|606
7SYK|1|2|U|607
7SYK|1|2|C|608
*
7SYK|1|2|G|635
7SYK|1|2|C|636
7SYK|1|2|U|637
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS5 (S2)
- Chain E
- uS3
- Chain K
- uS4
- Chain Y
- uS12
- Chain f
- eS30
Coloring options: