IL_7SYK_033
3D structure
- PDB id
- 7SYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 7SYK|1|2|A|668, 7SYK|1|2|A|669, 7SYK|1|2|A|670
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYK_033 not in the Motif Atlas
- Geometric match to IL_6CZR_134
- Geometric discrepancy: 0.1635
- The information below is about IL_6CZR_134
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.5
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
7SYK|1|2|G|665
7SYK|1|2|U|666
7SYK|1|2|U|667
7SYK|1|2|A|668
7SYK|1|2|A|669
7SYK|1|2|A|670
7SYK|1|2|A|671
*
7SYK|1|2|U|1161
7SYK|1|2|C|1162
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Y
- uS12
- Chain b
- eS26 (S26)
Coloring options: