IL_7SYK_050

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7SYK|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYK_050 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.2569

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7SYK|1|2|G|952
7SYK|1|2|C|953
7SYK|1|2|U|954
7SYK|1|2|A|955
7SYK|1|2|G|956
*
7SYK|1|2|C|967
7SYK|1|2|U|968
7SYK|1|2|U|969
7SYK|1|2|G|970
7SYK|1|2|G|971
7SYK|1|2|A|972
7SYK|1|2|C|973
7SYK|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11