3D structure

PDB id
7SYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GGAGUAUG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYK_056 not in the Motif Atlas
Geometric match to IL_4V88_440
Geometric discrepancy: 0.1039
The information below is about IL_4V88_440
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

7SYK|1|2|G|1168
7SYK|1|2|G|1169
7SYK|1|2|A|1170
7SYK|1|2|G|1171
7SYK|1|2|U|1172
7SYK|1|2|A|1173
7SYK|1|2|U|1174
7SYK|1|2|G|1175
*
7SYK|1|2|U|1186
7SYK|1|2|G|1187
7SYK|1|2|A|1188
7SYK|1|2|A|1189
7SYK|1|2|A|1190
7SYK|1|2|C|1191

Current chains

Chain 2
18S rRNA

Nearby chains

Chain Y
uS12
Chain n
60s ribosomal protein l41

Coloring options:


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