3D structure

PDB id
7SYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GACAGGAUUGA*UCUCGAUUC
Length
20 nucleotides
Bulged bases
7SYK|1|2|G|1285
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYK_062 not in the Motif Atlas
Homologous match to IL_8C3A_453
Geometric discrepancy: 0.4375
The information below is about IL_8C3A_453
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38882.1
Basepair signature
cWW-L-R-tSS-R-L-tSH-R-L-cWW-R-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

7SYK|1|2|G|1281
7SYK|1|2|A|1282
7SYK|1|2|C|1283
7SYK|1|2|A|1284
7SYK|1|2|G|1285
7SYK|1|2|G|1286
7SYK|1|2|A|1287
7SYK|1|2|U|1288
7SYK|1|2|U|1289
7SYK|1|2|G|1290
7SYK|1|2|A|1291
*
7SYK|1|2|U|1308
7SYK|1|2|C|1309
7SYK|1|2|U|1310
7SYK|1|2|C|1311
7SYK|1|2|G|1312
7SYK|1|2|A|1313
7SYK|1|2|U|1314
7SYK|1|2|U|1315
7SYK|1|2|C|1316

Current chains

Chain 2
18S rRNA

Nearby chains

Chain L
eS10
Chain N
eS12
Chain e
eS29
Chain g
40S ribosomal protein S27a

Coloring options:


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