IL_7SYK_085

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYK_085 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1612

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7SYK|1|2|C|1742
7SYK|1|2|G|1743
7SYK|1|2|G|1744
7SYK|1|2|A|1745
7SYK|1|2|U|1746
*
7SYK|1|2|A|1788
7SYK|1|2|G|1789
7SYK|1|2|A|1790
7SYK|1|2|A|1791
7SYK|1|2|G|1792

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8