3D structure

PDB id
7SYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CGGAU*AGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYK_085 not in the Motif Atlas
Geometric match to IL_7RQB_075
Geometric discrepancy: 0.1612
The information below is about IL_7RQB_075
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_56467.8
Basepair signature
cWW-tSH-tSH-tHS-cWW
Number of instances in this motif group
29

Unit IDs

7SYK|1|2|C|1742
7SYK|1|2|G|1743
7SYK|1|2|G|1744
7SYK|1|2|A|1745
7SYK|1|2|U|1746
*
7SYK|1|2|A|1788
7SYK|1|2|G|1789
7SYK|1|2|A|1790
7SYK|1|2|A|1791
7SYK|1|2|G|1792

Current chains

Chain 2
18S rRNA

Nearby chains

Chain H
eS6
Chain J
eS8

Coloring options:


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