IL_7SYK_105

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UACC*GGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYK_105 not in the Motif Atlas

Geometric match to IL_8C3A_109

Geometric discrepancy: 0.2691

The information below is about IL_8C3A_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7SYK|1|2|U|1714
7SYK|1|2|A|1715
7SYK|1|2|C|1716
7SYK|1|2|C|1717
*
7SYK|1|2|G|1816
7SYK|1|2|G|1817
7SYK|1|2|A|1818
7SYK|1|2|A|1819

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41