3D structure

PDB id
7SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.5 Å

Loop

Sequence
UAUCAA*UGACCACG
Length
14 nucleotides
Bulged bases
7SYL|1|2|U|361, 7SYL|1|2|C|399
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYL_020 not in the Motif Atlas
Geometric match to IL_5J7L_014
Geometric discrepancy: 0.1723
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

7SYL|1|2|U|359
7SYL|1|2|A|360
7SYL|1|2|U|361
7SYL|1|2|C|362
7SYL|1|2|A|363
7SYL|1|2|A|364
*
7SYL|1|2|U|396
7SYL|1|2|G|397
7SYL|1|2|A|398
7SYL|1|2|C|399
7SYL|1|2|C|400
7SYL|1|2|A|401
7SYL|1|2|C|402
7SYL|1|2|G|403

Current chains

Chain 2
18S rRNA

Nearby chains

Chain J
eS8
Chain M
uS17
Chain Y
uS12

Coloring options:


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