IL_7SYL_023
3D structure
- PDB id
- 7SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GGGA*UACC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYL_023 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.3362
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7SYL|1|2|G|436
7SYL|1|2|G|437
7SYL|1|2|G|438
7SYL|1|2|A|439
*
7SYL|1|2|U|454
7SYL|1|2|A|455
7SYL|1|2|C|456
7SYL|1|2|C|457
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain H
- eS6
- Chain J
- eS8
Coloring options: