3D structure

PDB id
7SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.5 Å

Loop

Sequence
GGGA*UACC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYL_023 not in the Motif Atlas
Geometric match to IL_4K27_001
Geometric discrepancy: 0.3362
The information below is about IL_4K27_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

7SYL|1|2|G|436
7SYL|1|2|G|437
7SYL|1|2|G|438
7SYL|1|2|A|439
*
7SYL|1|2|U|454
7SYL|1|2|A|455
7SYL|1|2|C|456
7SYL|1|2|C|457

Current chains

Chain 2
18S rRNA

Nearby chains

Chain H
eS6
Chain J
eS8

Coloring options:


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