IL_7SYL_048

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGCUAG*CUUGGACCG

Length

15 nucleotides

Bulged bases

7SYL|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYL_048 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.3431

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

7SYL|1|2|C|951
7SYL|1|2|G|952
7SYL|1|2|C|953
7SYL|1|2|U|954
7SYL|1|2|A|955
7SYL|1|2|G|956
*
7SYL|1|2|C|967
7SYL|1|2|U|968
7SYL|1|2|U|969
7SYL|1|2|G|970
7SYL|1|2|G|971
7SYL|1|2|A|972
7SYL|1|2|C|973
7SYL|1|2|C|974
7SYL|1|2|G|975

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11