IL_7SYL_055

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYL_055 not in the Motif Atlas

Geometric match to IL_6CZR_146

Geometric discrepancy: 0.1759

The information below is about IL_6CZR_146

Detailed Annotation

9x7 Sarcin-Ricin with inserted C; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_68633.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7SYL|1|2|G|1168
7SYL|1|2|G|1169
7SYL|1|2|A|1170
7SYL|1|2|G|1171
7SYL|1|2|U|1172
7SYL|1|2|A|1173
7SYL|1|2|U|1174
7SYL|1|2|G|1175
7SYL|1|2|G|1176
*
7SYL|1|2|C|1185
7SYL|1|2|U|1186
7SYL|1|2|G|1187
7SYL|1|2|A|1188
7SYL|1|2|A|1189
7SYL|1|2|A|1190
7SYL|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41