3D structure

PDB id
7SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.5 Å

Loop

Sequence
UGCAUGG*UCUGUGAUG
Length
16 nucleotides
Bulged bases
7SYL|1|2|C|1331, 7SYL|1|2|U|1494, 7SYL|1|2|G|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYL_063 not in the Motif Atlas
Homologous match to IL_8P9A_439
Geometric discrepancy: 0.2451
The information below is about IL_8P9A_439
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86012.1
Basepair signature
cWW-tHS-tWH-cWH-cWW-L-L-cWW
Number of instances in this motif group
1

Unit IDs

7SYL|1|2|U|1329
7SYL|1|2|G|1330
7SYL|1|2|C|1331
7SYL|1|2|A|1332
7SYL|1|2|U|1333
7SYL|1|2|G|1334
7SYL|1|2|G|1335
*
7SYL|1|2|U|1492
7SYL|1|2|C|1493
7SYL|1|2|U|1494
7SYL|1|2|G|1495
7SYL|1|2|U|1496
7SYL|1|2|G|1497
7SYL|1|2|A|1498
7SYL|1|2|U|1499
7SYL|1|2|G|1500

Current chains

Chain 2
18S rRNA

Nearby chains

Chain E
uS3
Chain L
eS10
Chain V
uS10
Chain e
eS29

Coloring options:


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