IL_7SYL_077

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

7SYL|1|2|A|1824, 7SYL|1|2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYL_077 not in the Motif Atlas

Homologous match to IL_8CRE_469

Geometric discrepancy: 0.5511

The information below is about IL_8CRE_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11399.2

Basepair signature

cWW-cHW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7SYL|1|2|C|1708
7SYL|1|2|G|1709
7SYL|1|2|C|1710
7SYL|1|2|U|1711
*
7SYL|1|2|A|1822
7SYL|1|2|A|1823
7SYL|1|2|A|1824
7SYL|1|2|A|1825
7SYL|1|2|G|1826

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41