IL_7SYL_103

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUACC*GGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYL_103 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3476

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7SYL|1|2|C|1713
7SYL|1|2|U|1714
7SYL|1|2|A|1715
7SYL|1|2|C|1716
7SYL|1|2|C|1717
*
7SYL|1|2|G|1816
7SYL|1|2|G|1817
7SYL|1|2|A|1818
7SYL|1|2|A|1819
7SYL|1|2|G|1820

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41