IL_7SYM_012

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYM|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYM_012 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1943

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7SYM|1|2|G|145
7SYM|1|2|G|146
7SYM|1|2|A|147
7SYM|1|2|U|148
7SYM|1|2|A|149
7SYM|1|2|A|150
7SYM|1|2|C|151
*
7SYM|1|2|G|167
7SYM|1|2|C|168
7SYM|1|2|U|169
7SYM|1|2|A|170
7SYM|1|2|A|171
7SYM|1|2|U|172
7SYM|1|2|A|173
7SYM|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

40S ribosomal protein S24