IL_7SYM_050

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7SYM|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYM_050 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.2871

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7SYM|1|2|G|952
7SYM|1|2|C|953
7SYM|1|2|U|954
7SYM|1|2|A|955
7SYM|1|2|G|956
*
7SYM|1|2|C|967
7SYM|1|2|U|968
7SYM|1|2|U|969
7SYM|1|2|G|970
7SYM|1|2|G|971
7SYM|1|2|A|972
7SYM|1|2|C|973
7SYM|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain P

uS11