IL_7SYM_052
3D structure
- PDB id
- 7SYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 7SYM|1|2|C|1153, 7SYM|1|2|U|1155, 7SYM|1|2|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYM_052 not in the Motif Atlas
- Geometric match to IL_4V88_437
- Geometric discrepancy: 0.1884
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7SYM|1|2|C|1091
7SYM|1|2|G|1092
7SYM|1|2|A|1093
*
7SYM|1|2|U|1152
7SYM|1|2|C|1153
7SYM|1|2|U|1154
7SYM|1|2|U|1155
7SYM|1|2|U|1156
7SYM|1|2|G|1157
7SYM|1|2|G|1158
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- 40S ribosomal protein S2
- Chain M
- uS17
- Chain O
- uS15
- Chain X
- uS8
- Chain Y
- uS12
- Chain c
- eS27
Coloring options: