IL_7SYM_069

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

7SYM|1|2|C|1403, 7SYM|1|2|U|1404, 7SYM|1|2|U|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYM_069 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.3514

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7SYM|1|2|A|1402
7SYM|1|2|C|1403
7SYM|1|2|U|1404
7SYM|1|2|A|1405
*
7SYM|1|2|U|1441
7SYM|1|2|U|1442
7SYM|1|2|C|1443
7SYM|1|2|U|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain R

uS9

Chain V

uS10