IL_7SYM_072
3D structure
- PDB id
- 7SYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 7SYM|1|2|A|1580, 7SYM|1|2|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYM_072 not in the Motif Atlas
- Geometric match to IL_4LFB_052
- Geometric discrepancy: 0.2406
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7SYM|1|2|G|1550
7SYM|1|2|U|1551
7SYM|1|2|G|1552
7SYM|1|2|C|1553
7SYM|1|2|C|1554
7SYM|1|2|U|1555
7SYM|1|2|A|1556
7SYM|1|2|C|1557
7SYM|1|2|C|1558
*
7SYM|1|2|G|1577
7SYM|1|2|U|1578
7SYM|1|2|A|1579
7SYM|1|2|A|1580
7SYM|1|2|C|1581
7SYM|1|2|C|1582
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain L
- eS10
- Chain V
- uS10
- Chain e
- eS29
Coloring options: