IL_7SYM_098

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGGCCC*GUCCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYM_098 not in the Motif Atlas

Geometric match to IL_8GLP_029

Geometric discrepancy: 0.3955

The information below is about IL_8GLP_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.3

Basepair signature

cWW-L-R-L-R-L-cWW-cWW

Number of instances in this motif group

6

Unit IDs

7SYM|1|2|C|1268
7SYM|1|2|G|1269
7SYM|1|2|G|1270
7SYM|1|2|C|1271
7SYM|1|2|C|1272
7SYM|1|2|C|1273
*
7SYM|1|2|G|1510
7SYM|1|2|U|1511
7SYM|1|2|C|1512
7SYM|1|2|C|1513
7SYM|1|2|G|1514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a