Motif IL_31545.3 Version IL_31545.3 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-10 | 4-9 | 5-8 | 6-7 | 6-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_029 | 8GLP | 0.6679 | 0 | L5 | LSU rRNA | C | 490 | G | 491 | U | 492 | G | 493 | U | 494 | C | 495 | * | G | 659 | A | 660 | C | 661 | C | 662 | G | 663 | cWW | ncWS | ncWS | cWW | ncWS | ||
| 2 | IL_9H3G_106 | 9H3G | 0.5409 | 0 | A | LSU rRNA | U | 2496 | U | 2497 | A | 2498 | A | 2499 | C | 2500 | G | 2501 | * | C | 2442 | U | 2443 | U | 2444 | G | 2445 | A | 2446 | cWW | ncWW | ncWW | ||||
| 3 | IL_8CRE_399 | 8CRE | 0.0000 | 0 | CM | SSU rRNA | U | 117 | U | 118 | A | 119 | U | 120 | U | 121 | U | 122 | * | A | 293 | U | 294 | U | 295 | C | 296 | A | 297 | cWW | ntHS | cWw | cWw | cWW | ||
| 4 | IL_9PN5_151 | 9PN5 | 0.0625 | 0 | B5 | SSU rRNA | U | 117 | U | 118 | A | 119 | PSU | 120 | U | 121 | U | 122 | * | A | 295 | U | 296 | U | 297 | C | 298 | A | 299 | cWW | ntHS | cWw | cWW | |||
| 5 | IL_9H3G_164 | 9H3G | 0.1364 | 0 | h1 | SSU rRNA | U | 118 | U | 119 | G | 120 | PSU | 121 | U | 122 | OMU | 123 | * | A | 297 | U | 298 | U | 299 | C | 300 | A | 301 | cWW | ncSW | cWw | cWw | cWW | ||
| 6 | IL_8GLP_322 | 8GLP | 0.2240 | 0 | S2 | SSU rRNA | OMU | 116 | C | 117 | C | 118 | PSU | 119 | U | 120 | OMU | 121 | * | A | 343 | U | 344 | U | 345 | C | 346 | G | 347 | cWW | ncWw | ncBW | cWw | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGUC*GACCG | 1 |
| UUAACG*CUUGA | 1 |
| UUAUUU*AUUCA | 1 |
| UUA(PSU)UU*AUUCA | 1 |
| UUG(PSU)U(OMU)*AUUCA | 1 |
| (OMU)CC(PSU)U(OMU)*AUUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGU*ACC | 1 |
| UAAC*UUG | 1 |
| UAUU*UUC | 1 |
| UA(PSU)U*UUC | 1 |
| UG(PSU)U*UUC | 1 |
| CC(PSU)U*UUC | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-L-R-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.37 | Max 0.73
Coloring options: