IL_7SYM_106

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UUUA*UUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYM_106 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2235

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7SYM|1|2|U|1728
7SYM|1|2|U|1729
7SYM|1|2|U|1730
7SYM|1|2|A|1731
*
7SYM|1|2|U|1803
7SYM|1|2|U|1804
7SYM|1|2|G|1805
7SYM|1|2|A|1806

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8