IL_7SYN_041

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGGCG*CCCG

Length

9 nucleotides

Bulged bases

7SYN|1|2|C|753

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_041 not in the Motif Atlas

Geometric match to IL_7VYX_002

Geometric discrepancy: 0.3848

The information below is about IL_7VYX_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7SYN|1|2|C|750
7SYN|1|2|G|751
7SYN|1|2|G|752
7SYN|1|2|C|753
7SYN|1|2|G|754
*
7SYN|1|2|C|790
7SYN|1|2|C|791
7SYN|1|2|C|792
7SYN|1|2|G|793

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6