IL_7SYN_060

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCUG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_060 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2825

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7SYN|1|2|C|1230
7SYN|1|2|C|1231
7SYN|1|2|U|1232
7SYN|1|2|G|1233
*
7SYN|1|2|C|1525
7SYN|1|2|G|1526
7SYN|1|2|C|1527
7SYN|1|2|G|1528

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain T

uS13

Chain U

eS19