IL_7SYN_068

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7SYN|1|2|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_068 not in the Motif Atlas

Geometric match to IL_4V88_452

Geometric discrepancy: 0.2281

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7SYN|1|2|C|1337
7SYN|1|2|G|1338
*
7SYN|1|2|C|1488
7SYN|1|2|A|1489
7SYN|1|2|G|1490

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain E

uS3

Chain V

uS10

Chain e

uS14