IL_7SYN_076
3D structure
- PDB id
- 7SYN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 7SYN|1|2|G|1552, 7SYN|1|2|A|1556, 7SYN|1|2|A|1580, 7SYN|1|2|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYN_076 not in the Motif Atlas
- Geometric match to IL_4LFB_052
- Geometric discrepancy: 0.3259
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7SYN|1|2|G|1550
7SYN|1|2|U|1551
7SYN|1|2|G|1552
7SYN|1|2|C|1553
7SYN|1|2|C|1554
7SYN|1|2|U|1555
7SYN|1|2|A|1556
7SYN|1|2|C|1557
7SYN|1|2|C|1558
*
7SYN|1|2|G|1577
7SYN|1|2|U|1578
7SYN|1|2|A|1579
7SYN|1|2|A|1580
7SYN|1|2|C|1581
7SYN|1|2|C|1582
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain L
- eS10
- Chain V
- uS10
- Chain e
- uS14
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