IL_7SYN_079

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_079 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.1277

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

7SYN|1|2|G|1702
7SYN|1|2|C|1703
7SYN|1|2|C|1704
7SYN|1|2|C|1705
*
7SYN|1|2|G|1829
7SYN|1|2|U|1830
7SYN|1|2|A|1831
7SYN|1|2|A|1832
7SYN|1|2|C|1833

Current chains

Chain 2

18S rRNA

Nearby chains

Chain n

eL41