IL_7SYN_105

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GACAGGAUUG*CUCGAUUC

Length

18 nucleotides

Bulged bases

7SYN|1|2|G|1285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_105 not in the Motif Atlas

Homologous match to IL_8P9A_470

Geometric discrepancy: 0.4457

The information below is about IL_8P9A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28304.1

Basepair signature

cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7SYN|1|2|G|1281
7SYN|1|2|A|1282
7SYN|1|2|C|1283
7SYN|1|2|A|1284
7SYN|1|2|G|1285
7SYN|1|2|G|1286
7SYN|1|2|A|1287
7SYN|1|2|U|1288
7SYN|1|2|U|1289
7SYN|1|2|G|1290
*
7SYN|1|2|C|1309
7SYN|1|2|U|1310
7SYN|1|2|C|1311
7SYN|1|2|G|1312
7SYN|1|2|A|1313
7SYN|1|2|U|1314
7SYN|1|2|U|1315
7SYN|1|2|C|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain e

uS14

Chain g

eS31