IL_7SYN_109

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUUUA*UUGACU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_109 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.2783

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7SYN|1|2|G|1726
7SYN|1|2|G|1727
7SYN|1|2|U|1728
7SYN|1|2|U|1729
7SYN|1|2|U|1730
7SYN|1|2|A|1731
*
7SYN|1|2|U|1803
7SYN|1|2|U|1804
7SYN|1|2|G|1805
7SYN|1|2|A|1806
7SYN|1|2|C|1807
7SYN|1|2|U|1808

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8