IL_7SYO_011

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYO|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYO_011 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.2251

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7SYO|1|2|G|145
7SYO|1|2|G|146
7SYO|1|2|A|147
7SYO|1|2|U|148
7SYO|1|2|A|149
7SYO|1|2|A|150
7SYO|1|2|C|151
*
7SYO|1|2|G|167
7SYO|1|2|C|168
7SYO|1|2|U|169
7SYO|1|2|A|170
7SYO|1|2|A|171
7SYO|1|2|U|172
7SYO|1|2|A|173
7SYO|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24