IL_7SYO_053

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYO_053 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.1542

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7SYO|1|2|G|1168
7SYO|1|2|G|1169
7SYO|1|2|A|1170
7SYO|1|2|G|1171
7SYO|1|2|U|1172
7SYO|1|2|A|1173
7SYO|1|2|U|1174
7SYO|1|2|G|1175
*
7SYO|1|2|U|1186
7SYO|1|2|G|1187
7SYO|1|2|A|1188
7SYO|1|2|A|1189
7SYO|1|2|A|1190
7SYO|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

eL41