IL_7SYO_064

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYO_064 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2291

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7SYO|1|2|G|1338
7SYO|1|2|U|1339
7SYO|1|2|U|1340
*
7SYO|1|2|A|1487
7SYO|1|2|C|1488

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain E

uS3

Chain V

uS10

Chain e

uS14