IL_7SYO_076

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGUC*GUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYO_076 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2419

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7SYO|1|2|C|1705
7SYO|1|2|G|1706
7SYO|1|2|U|1707
7SYO|1|2|C|1708
*
7SYO|1|2|G|1826
7SYO|1|2|U|1827
7SYO|1|2|C|1828
7SYO|1|2|G|1829

Current chains

Chain 2

18S rRNA

Nearby chains

Chain n

eL41