IL_7SYO_084

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYO_084 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1691

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7SYO|1|2|C|1742
7SYO|1|2|G|1743
7SYO|1|2|G|1744
7SYO|1|2|A|1745
7SYO|1|2|U|1746
*
7SYO|1|2|A|1788
7SYO|1|2|G|1789
7SYO|1|2|A|1790
7SYO|1|2|A|1791
7SYO|1|2|G|1792

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8