IL_7SYO_098

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GACCGC*GAGGCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYO_098 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3221

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7SYO|1|2|G|874
7SYO|1|2|A|875
7SYO|1|2|C|876
7SYO|1|2|C|877
7SYO|1|2|G|878
7SYO|1|2|C|879
*
7SYO|1|2|G|907
7SYO|1|2|A|908
7SYO|1|2|G|909
7SYO|1|2|G|910
7SYO|1|2|C|911
7SYO|1|2|C|912

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS7

Chain M

uS17